PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g02638.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 174aa    MW: 18958.5 Da    PI: 6.7651
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g02638.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26029.22.6e-09244138
                    DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFG 38
                              +C++C++lr++C ++C++++ +     p +q++++ +v+k+FG
  Peaxi162Scf00003g02638.1  2 SCNGCRILRKGCHENCMIRQSLqgiesPLAQANATVFVAKFFG 44
                              6*********************9999999*************9 PP
2DUF26029.71.9e-0946865797
                    DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
                              +++sl++eA+ r+ +Pv+Gavg++ +++++++q+++e++l+
  Peaxi162Scf00003g02638.1 46 LFQSLLFEACGRTINPVNGAVGLLGTGNWHICQSAVETVLQ 86
                              799********************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031951.2E-6245IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-54684IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSCNGCRILR KGCHENCMIR QSLQGIESPL AQANATVFVA KFFGHLFQSL LFEACGRTIN  60
PVNGAVGLLG TGNWHICQSA VETVLQGGML RALPEYSSVA AAASVADQED LDQGLMSRLP  120
ARIMMGAEKR RDSTPASLNS DESDTTTFES GNVCHQQNQH TQQGHETKLL RLFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625187.11e-75PREDICTED: LOB domain-containing protein 37-like
RefseqXP_016477118.11e-75PREDICTED: LOB domain-containing protein 37-like
RefseqXP_019233192.11e-75PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SN232e-45LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A1J6KXX93e-74A0A1J6KXX9_NICAT; Lob domain-containing protein 37
TrEMBLA0A1S4AL073e-74A0A1S4AL07_TOBAC; LOB domain-containing protein 37-like
STRINGXP_009625187.15e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-47LOB domain-containing protein 38