PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g04037.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 490aa    MW: 54771.5 Da    PI: 8.083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g04037.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000781103323
                               ET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                               C+   Cgk+F +   L++H   H
  Peaxi162Scf00003g04037.1  81 CSyeGCGKTFIDAGALRKHSHIH 103
                               77779**************7766 PP
2zf-C2H2163.4e-05108132123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y+C+   Cgk F ++s LkrH   H
  Peaxi162Scf00003g04037.1 108 YVCHyeGCGKKFLDSSKLKRHFLIH 132
                               9********************8877 PP
3zf-C2H220.99.7e-07138162123
                               EEET..TTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                               y Cp   Cgk Fs   nL++H++tH
  Peaxi162Scf00003g04037.1 138 YICPheGCGKAFSLDFNLRSHMKTH 162
                               89**********************9 PP
4zf-C2H215.45.2e-05168193123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               + Cp   Cgk++ + + Lk+Hi + H
  Peaxi162Scf00003g04037.1 168 HICPyqECGKRYAHEYKLKNHIAStH 193
                               68********************9988 PP
5zf-C2H214.50.0001231256123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               y+Cp   C+k + + + L+ H+r+ H
  Peaxi162Scf00003g04037.1 231 YSCPyeGCDKAYIHEYKLNLHLRNmH 256
                               99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-1374105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003279103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78379108IPR007087Zinc finger, C2H2
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.84E-882132No hitNo description
Gene3DG3DSA:3.30.160.603.3E-14106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.921108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576675.02E-14119171No hitNo description
Gene3DG3DSA:3.30.160.605.4E-20129163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.2E-4138162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.778138167IPR007087Zinc finger, C2H2
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-7164194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.042168193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743168198IPR007087Zinc finger, C2H2
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-8226253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.05E-5227261No hitNo description
SMARTSM003550.0015231256IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.344231261IPR007087Zinc finger, C2H2
PROSITE patternPS000280233256IPR007087Zinc finger, C2H2
PfamPF061799.2E-21368462IPR009332Mediator of RNA polymerase II transcription subunit 22
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0016592Cellular Componentmediator complex
GO:0001104Molecular FunctionRNA polymerase II transcription cofactor activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
METHYMNAHH LFERRPFSKS KAPAVKWFKE WVPQDVVATG GKCYVLKWVN EATLKALKEK  60
PKEPEVPAPE PEPTSEVLFL CSYEGCGKTF IDAGALRKHS HIHGERQYVC HYEGCGKKFL  120
DSSKLKRHFL IHTGERDYIC PHEGCGKAFS LDFNLRSHMK THSQENYHIC PYQECGKRYA  180
HEYKLKNHIA STHQKNNTPE AVKYTPPVEK PMKTPKSSSA AYAPASSDRP YSCPYEGCDK  240
AYIHEYKLNL HLRNMHPGHF PDENTKNAQS TGDNEMDEGS DQDAYAAKRG NGKIQKQSRP  300
KPSLKQPPLK VARKSSSASP ANLSIGKKPW PVKEENYNEE DRGAGGGGGG PTAAAAAAAA  360
QKQKSLLQRV DADIGNIVDN FSFLVNDPPV RNSQEAFMME MRASRMVQAA DSLLKLVSEL  420
KQTAIFSGFA SLNDHVEQRT EEFTEQAEKT ESMLSRIGEE AAASLKELES HYYSSAERTS  480
LPSYSQDAVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-33811958119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350548.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L31e-155YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLM1AIE20.0M1AIE2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000234590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-142C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]