PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00003g04714.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 194aa MW: 22316.1 Da PI: 10.5375

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00003g04714.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C k F+++ L H++ H Peaxi162Scf00003g04714.1 72 YECNYCFKNFPTSQALGGHQNAH 94 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.77E-7	69	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-4	70	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.572	72	99	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.8E-6	72	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEKKRDFMKV ESFSQLPFKL FGKEFGRGNT NMTTFNMSKS IVETNRVNLA NRIAKESYNV 60 VNNIEESSRK KYECNYCFKN FPTSQALGGH QNAHKKERQQ AKRAHNFHHP TWANNISNSA 120 RFYGSHDVNY VTSPYSKISP LAFRRAPPAD GSKIFPKIKS SKFESRFGYE PKKEVQDGQT 180 DGTLTESFIP RGKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267119.1	1e-49	PREDICTED: zinc finger protein 8-like
TrEMBL	A0A314KZD0	1e-47	A0A314KZD0_NICAT; Zinc finger protein 8
STRING	XP_009619423.1	5e-42	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1473	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	3e-26	C2H2 family protein