PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g04919.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family E2F/DP
Protein Properties Length: 335aa    MW: 36532.7 Da    PI: 7.7821
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g04919.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.41.1e-2783165271
                   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirw 69 
                               ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  Peaxi162Scf00003g04919.1  83 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpsnslaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW 163
                               689********...*****999*******************************************************.******* PP

                   E2F_TDP  70 kg 71 
                               kg
  Peaxi162Scf00003g04919.1 164 KG 165
                               98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.5E-12432335IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.7E-4678169IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.5E-3682165IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.9E-2584165IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.36E-2185166IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.74E-43171273IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.92E-43172283No hitNo description
SMARTSM011385.2E-75172333IPR014889Transcription factor DP, C-terminal
PfamPF087814.6E-42173304IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVNNLEESGN NHPLEVSRGG NNGGRVGGGG GGGTRSWGTT VSGQSVSTSS SVGSPSGHPV  60
SDNTFLSNGK KKRGQRATGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA DELVAEFSDP  120
SNSLASPDQQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTD VNDIEELKAE  180
RLSLRNRIEK KAAYLQELEE QHVGLQNLIK RNEQLYGSGN TPSGGVALPF ILVQTRPHAT  240
VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMKFCGKPK NDVTPNVSVD GGEGSSMANM  300
FQHQIPHPSA ANTSGRPPTS PPIPGILKAR VKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-4076167190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12230GGRVGGGGG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6845580.0KC684558.1 Solanum lycopersicum transcription factor DP/E2 dimerization partner-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162488.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-143DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2G9FZK60.0A0A2G9FZK6_9LAMI; E2F-like protein
STRINGXP_009595017.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-136Transcription factor DP