PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00003g04929.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 205aa    MW: 23278.3 Da    PI: 4.8811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00003g04929.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-116696338
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-S CS
                       HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKl 38
                              ++h+e+ErrRR+riNs +++Lr+ll  +s     K 
  Peaxi162Scf00003g04929.1 66 KNHKEAERRRRERINSHLDRLRTLLSCNS-----KT 96
                              78***********************8863.....33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.19463124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.14E-863103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-86694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-86693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MQQQDLLENL DFCHYLAKNK SNEMGEYGFD IQAIKSFCSS SFYPHLEFQE TVESTTPEAR  60
AIAASKNHKE AERRRRERIN SHLDRLRTLL SCNSKTSEIM QLETNFPSEA DEITVLSNDY  120
LADGRILIKA SLCCDDRFDL IPDLIETLKS LGLSPLRAEM VTLGGRIRNV IVLAADKDHS  180
DDESLLFLRD ALKSIVQRSS YGTVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754494e-63HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755224e-63HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602423.11e-115PREDICTED: transcription factor bHLH106-like
RefseqXP_016478079.11e-115PREDICTED: transcription factor bHLH106-like
SwissprotO806743e-47BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A1S4AN701e-114A0A1S4AN70_TOBAC; transcription factor bHLH106-like
STRINGXP_009602423.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128411718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]