PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00005g00493.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YB

Protein Properties

Length: 181aa MW: 19678.9 Da PI: 6.7906

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00005g00493.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	187.6	8.7e-59	33	130	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkv Peaxi162Scf00005g00493.1 33 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKV 117 69********************************************************************************* PP NF-YB 86 ylkkyrelegekk 98 yl++yre+eg++k Peaxi162Scf00005g00493.1 118 YLTRYREMEGDTK 130 ********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-55	29	145	IPR009072	Histone-fold
SuperFamily	SSF47113	5.43E-41	36	139	IPR009072	Histone-fold
Pfam	PF00808	2.2E-28	39	103	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.5E-21	67	85	No hit	No description
PROSITE pattern	PS00685	0	70	86	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.5E-21	86	104	No hit	No description
PRINTS	PR00615	2.5E-21	105	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MADGQGSSRS PASPNGGGSH ESGGDQSPRS SNVREQDRFL PIANISRIMK KALPANGKIA 60 KDAKETVQEC VSEFISFITS EASDKCQREK RKTINGDDLL WAMATLGFED YIEPLKVYLT 120 RYREMEGDTK GSAKPAEGSV KREGMQPSPG SQLAHQGSFS QGMNYGNSQS QHMMVPMQGT 180 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-48	33	124	1	92	Transcription factor HapC (Eurofung)
4g92_B	5e-48	33	124	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620316.1	1e-126	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X4
Refseq	XP_016449854.1	1e-126	PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X1
Swissprot	Q8VYK4	4e-92	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A1S3YCJ2	1e-124	A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRING	XP_009620316.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-94	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]