 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Peaxi162Scf00006g00236.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
| Family | C3H | ||||||||
| Protein Properties | Length: 522aa MW: 56801.7 Da PI: 8.0667 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 37.1 | 5.3e-12 | 162 | 186 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C ++++t tCkyGd+CkF H+
Peaxi162Scf00006g00236.1 162 GEKDCAHYMQTRTCKYGDSCKFDHP 186
7889********************8 PP
| |||||||
| 2 | zf-CCCH | 36.8 | 6.4e-12 | 211 | 237 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+++++t Ck+G+rCkF+H++
Peaxi162Scf00006g00236.1 211 PGEPDCPYYMKTQKCKFGNRCKFNHPK 237
5789*********************96 PP
| |||||||
| 3 | zf-CCCH | 39.5 | 9.1e-13 | 262 | 286 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C f+++tGtCk+G++CkF+H++
Peaxi162Scf00006g00236.1 262 EPTCTFYMKTGTCKFGATCKFHHPR 286
689********************96 PP
| |||||||
| 4 | zf-CCCH | 34.3 | 4e-11 | 336 | 362 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C+f+ +tG CkyG++C+++H++
Peaxi162Scf00006g00236.1 336 PGEVDCPFYVKTGSCKYGGTCRYNHSE 362
57899********************95 PP
| |||||||
| 5 | zf-CCCH | 40.9 | 3.5e-13 | 414 | 437 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+ +C+f+++tG+Ck+G+rC+F+H+
Peaxi162Scf00006g00236.1 414 QIECDFYMKTGECKFGERCRFHHP 437
568********************9 PP
| |||||||
| 6 | zf-CCCH | 39.7 | 8.2e-13 | 471 | 492 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C+++++tGtCkyG++CkF H+p
Peaxi162Scf00006g00236.1 471 CPYYMKTGTCKYGATCKFDHPP 492
********************96 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 13.742 | 160 | 188 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.7E-4 | 160 | 187 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.59E-6 | 161 | 187 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-9 | 162 | 186 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 166 | 185 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.821 | 210 | 238 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.3E-5 | 210 | 237 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-9 | 212 | 237 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.37E-6 | 215 | 239 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 216 | 236 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.441 | 259 | 287 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.2E-6 | 259 | 286 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.3E-10 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-6 | 263 | 287 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 265 | 286 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.342 | 335 | 363 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.3E-6 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.1E-9 | 337 | 362 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.06E-5 | 339 | 364 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 341 | 362 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.601 | 411 | 439 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.0E-7 | 411 | 438 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-6 | 414 | 440 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-10 | 415 | 437 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 417 | 437 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.666 | 465 | 493 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.6E-6 | 465 | 492 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-6 | 469 | 492 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-10 | 471 | 492 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 471 | 490 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003723 | Molecular Function | RNA binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 522 aa Download sequence Send to blast |
MANQLYGYNP SSSSTGLTAG GGRTTTRSTD DYLSKDKSLL LGGSTSYFTS SSYSPTTMLY 60 NSNVQSDSYI PTTATRVPGL GAYSQSSLTG PPGVDSYTPA AAADSAFAGF KRSSADSLYH 120 RTLLAARNTI GQTEAWFSAN PLAKRPRFES ASNLSIYPQR PGEKDCAHYM QTRTCKYGDS 180 CKFDHPIWVP EGGIPDWKEV PVVTESLPER PGEPDCPYYM KTQKCKFGNR CKFNHPKDST 240 ARLSQGSVQN SDASVLPDRP SEPTCTFYMK TGTCKFGATC KFHHPRDIQL PSPKQENGSA 300 GNPGSANSEM TEDTTLIKPL SVPALLHNSK GLPIRPGEVD CPFYVKTGSC KYGGTCRYNH 360 SERTISPVFG APPTAHLNIG MVNPAASFLQ NFDPRLTQTM LGLLPPVYPQ RPGQIECDFY 420 MKTGECKFGE RCRFHHPLDR STPVVSANDA QQPNVKLTLA GLPRREGAVH CPYYMKTGTC 480 KYGATCKFDH PPPGEVMAMA TSQGASLPVE GEDNADVNEQ QQ |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975451 | 4e-96 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019263412.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
| Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
| TrEMBL | A0A314L6G9 | 0.0 | A0A314L6G9_NICAT; Zinc finger ccch domain-containing protein 37 | ||||
| STRING | XP_009782011.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA10640 | 21 | 25 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|