PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00006g00718.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

M-type_MADS

Protein Properties

Length: 98aa MW: 11347.3 Da PI: 10.4359

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00006g00718.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	43.5	4.2e-14	14	50	6	42
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +s r+ + kR + ++KKAeE S+LCd++vav+if s Peaxi162Scf00006g00718.1 14 ESVRNSILNKRAASLFKKAEEFSILCDVKVAVVIFNS 50 556667799*************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-7	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.694	1	50	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.12E-13	8	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.2E-14	14	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MIRERLNDTR NYSESVRNSI LNKRAASLFK KAEEFSILCD VKVAVVIFNS GEVEPIAWPS 60 YDQAKYIITR QLKDLLKLSA KKMAKLGERK KQLNQQCK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593028.1	2e-27	PREDICTED: MADS-box protein AGL71-like
Refseq	XP_016506481.1	2e-27	PREDICTED: MADS-box protein AGL71-like
TrEMBL	A0A1S4CZD3	5e-26	A0A1S4CZD3_TOBAC; MADS-box protein AGL71-like
STRING	XP_009593028.1	8e-27	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	2e-10	M-type_MADS family protein