PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00007g02125.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 242aa    MW: 28031.3 Da    PI: 6.7083
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00007g02125.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171460147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rg+W++eEd +l  +v+++G ++W++ +r+ g+ R++k+c++rw + 
  Peaxi162Scf00007g02125.1 14 RGAWSEEEDNKLRAYVERFGHPNWRKLPRYAGLMRCGKSCRLRWMNN 60
                              89******************************************997 PP
2Myb_DNA-binding57.53.1e-1867111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +g+ + eE++l++++++qlG++ W+tIa++++ gR+++++k++w+ +
  Peaxi162Scf00007g02125.1  67 KGNYSHEEEQLIIKLHNQLGNR-WSTIAAKLP-GRSDNDIKNHWHAH 111
                               7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.464961IPR017930Myb domain
SuperFamilySSF466892.66E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-221568IPR009057Homeodomain-like
CDDcd001671.89E-101661No hitNo description
PROSITE profilePS5129425.26262116IPR017930Myb domain
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002494.8E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2469115IPR009057Homeodomain-like
CDDcd001673.64E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRTPSIDKN GMKRGAWSEE EDNKLRAYVE RFGHPNWRKL PRYAGLMRCG KSCRLRWMNN  60
LRPGLKKGNY SHEEEQLIIK LHNQLGNRWS TIAAKLPGRS DNDIKNHWHA HLKKRTKTNA  120
NSSTMEQMST ESSQSGCQAE QSNSKLPELE NYCDPIDTSS PPEVSSSDLS KLFSSCSLLN  180
GMDWIEDDQI RSMEQLSNID SVEPLLDSFS CWTKPIDNFQ TEHCFDNVWS EHFDNFWTQP  240
FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121185110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267259.11e-106PREDICTED: myb-related protein Myb4-like
SwissprotQ6K1S61e-51MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A314KYX71e-105A0A314KYX7_NICAT; Myb-related protein myb4
STRINGXP_009766826.11e-102(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-53myb domain protein 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]