PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00008g00417.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bZIP

Protein Properties

Length: 336aa MW: 35880.4 Da PI: 5.1308

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00008g00417.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	78	1.1e-24	237	299	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN+aLk+el++l+ e++kl+se+ Peaxi162Scf00008g00417.1 237 ERELKRQKRKQSNRESARRSRLRKQAECEELQQRVETLSNENHALKDELQRLSVECEKLTSEN 299 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	4.6E-30	1	93	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	8.3E-20	232	296	No hit	No description
SMART	SM00338	4.1E-23	237	301	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-22	237	299	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.265	239	302	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.38E-11	240	296	No hit	No description
CDD	cd14702	1.10E-23	242	292	No hit	No description
PROSITE pattern	PS00036	0	244	259	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGAGEESTPT KPSKATAAQE TQTTPSYPDW SSSMQAYYGA GATPPFFPPA VASPTPHPYM 60 WGGQHPLMPP YGAPVPYPAM YPPAGVYAHP NMPMTPNTLQ ANPEADSRAP DGKDQSTGKK 120 LKGSSGGKAG ESGKVASGSG NDGATRSGES GSEGSSDEDD ENEFSANKSR SFDLMLANGT 180 SAQSNPATGN PVAMPATNLN IGMDLWNQSS GGPGMIKMRP NQPGVSPAIG REWVQDEREL 240 KRQKRKQSNR ESARRSRLRK QAECEELQQR VETLSNENHA LKDELQRLSV ECEKLTSENN 300 SIKEELTRLC GPEAVSKLES NGNATPLQSN VEEANS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	253	259	RRSRLRK
2	253	260	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013873	0.0	BT013873.1 Lycopersicon esculentum clone 132853R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629662.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Refseq	XP_009629670.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Refseq	XP_009629676.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Refseq	XP_016504929.1	0.0	PREDICTED: G-box-binding factor 1-like
Refseq	XP_018634334.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Refseq	XP_018634335.1	0.0	PREDICTED: G-box-binding factor 1-like isoform X1
Swissprot	P42774	1e-111	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A1S4CV95	0.0	A0A1S4CV95_TOBAC; G-box-binding factor 1-like
STRING	XP_009629662.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	2e-67	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]