PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00008g00428.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25592.8 Da    PI: 5.4893
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00008g00428.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.28e-2056109457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               ++++++eq++ Le+ F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Peaxi162Scf00008g00428.1  56 KRKLSDEQVNLLEQSFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 109
                               45899***********************************************95 PP
2HD-ZIP_I/II120.68.1e-3955146293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE+sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+   +++rLe+ev +
  Peaxi162Scf00008g00428.1  55 RKRKLSDEQVNLLEQSFGDEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKNEHDTNIVDKCRLENEVLK 139
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L+e+l++
  Peaxi162Scf00008g00428.1 140 LKEQLSD 146
                               ***9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.95750110IPR001356Homeobox domain
SMARTSM003897.0E-2053114IPR001356Homeobox domain
SuperFamilySSF466892.18E-1855119IPR009057Homeodomain-like
CDDcd000868.09E-1755111No hitNo description
PfamPF000466.5E-1756109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-2157117IPR009057Homeodomain-like
PRINTSPR000319.0E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000319.0E-690106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSTSSMNNHQ VDEQMLLISQ YYPGIYTQQL PQQGEVKPRR RRKKNKGGEE TGIMRKRKLS  60
DEQVNLLEQS FGDEHKLESE RKDKLASELG LDPRQVAVWF QNRRARWKNK KLEEEYSKLK  120
NEHDTNIVDK CRLENEVLKL KEQLSDAEKE IQRLLMEKPD GVYSSNSPST SSLSMEAIEP  180
PFLGEFGMGG LDINNGFYVP ENTYAQGLEW VNLYNIPYDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RRRKKNKGGEETGIMRKRK
24157RKKNKGGEETGIMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504930.11e-111PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232085e-80ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S4CUX71e-110A0A1S4CUX7_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009775418.11e-109(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.17e-75homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]