PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00010g00077.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

SRS

Protein Properties

Length: 294aa MW: 32494.6 Da PI: 6.7817

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00010g00077.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	181.8	2.9e-56	86	218	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsal 86 +sg++sC+dCGnqakkdC+++RCRtCCksrgf+C+thvkstWv+aakrrerqqq++++s+ +++r++ Peaxi162Scf00010g00077.1 86 TSGGISCEDCGNQAKKDCQYMRCRTCCKSRGFQCTTHVKSTWVSAAKRRERQQQQTSSSEL----------EEHRDH-------- 152 57899********************************************9998876332..........333332........ PP DUF702 87 sstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + k ++ ++++ le+ ++P+++ss+avf+cvr+ss+d++++++aYqtavsigGh+fkGiLy+qG Peaxi162Scf00010g00077.1 153 -NLKRQKDDPNSGLEVGNFPAKLSSSAVFQCVRMSSIDENDDQVAYQTAVSIGGHIFKGILYNQGHG 218 .11122344566788999*********************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-53	89	217	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-26	91	133	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.6E-26	170	216	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MAGFFSLEGR ETRQEQHHQE STNQQIINQE SNWFLYRNND QELPTYKGFE LWQPNPINQL 60 QDLYPTSLDH GLSSRSANFT IIRSSTSGGI SCEDCGNQAK KDCQYMRCRT CCKSRGFQCT 120 THVKSTWVSA AKRRERQQQQ TSSSELEEHR DHNLKRQKDD PNSGLEVGNF PAKLSSSAVF 180 QCVRMSSIDE NDDQVAYQTA VSIGGHIFKG ILYNQGHGSQ YNITTAGDTS SSGGEPLSHQ 240 HNVIGTATSA AANVAGSGSA AVVEGSNLFD PSLYPVATHH TFMAGTQFFT PPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778393.1	1e-125	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016477618.1	1e-125	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-93	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S4AMG2	1e-123	A0A1S4AMG2_TOBAC; protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1U7WIB5	1e-123	A0A1U7WIB5_NICSY; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009778393.1	1e-124	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	4e-54	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]