PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00011g00748.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 169aa    MW: 19529.1 Da    PI: 7.7646
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00011g00748.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer75.29.5e-241366357
               ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                               v+Y eC++N Aas  g+a+DGCgEf+p+ g++gt++ + CaAC CHRnFHR+ +
  Peaxi162Scf00011g00748.1 13 VVKYWECMHNYAASSMGYALDGCGEFCPT-GSHGTPEYFICAACHCHRNFHRKME 66
                              689*************************8.999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-131477IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-211465IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-201564IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152321.4081665IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.39E-7101162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-13107162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MANSHNQHLH GTVVKYWECM HNYAASSMGY ALDGCGEFCP TGSHGTPEYF ICAACHCHRN  60
FHRKMEIVDV ENTVVATPSP LPMEAEIGGG EIDQVDRSYK RNNCSYPRIR LNPEQREKVK  120
AFAEKVGWRW SKYNEEVKPF CEEIGITPNF LKNWIDNNRR RFGPNKIIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799887.11e-56PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_016452911.11e-56PREDICTED: zinc-finger homeodomain protein 5-like
TrEMBLA0A314L8S21e-58A0A314L8S2_NICAT; Zinc-finger homeodomain protein 6
STRINGXP_009799887.15e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108891118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-30homeobox protein 24