PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00012g00161.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 255aa    MW: 29229.9 Da    PI: 6.5081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00012g00161.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08150190954
                               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Peaxi162Scf00012g00161.1 150 ARLRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 190
                               699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-15146210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-13147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-10147195No hitNo description
SMARTSM003531.6E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-6151190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDINHQHHLK LTTSTWAPTM PNMDDHIFHN QQQQQEDACF NHHHHIWPSF PLQNPHHSHH  60
VIPSSSNQLQ QQVLPFDPVV NNHVQTLLAD PDQERDEDEQ EEEAEEELGA MKEMMFKIAA  120
MQPVDIDPAT IRKPKRRNVR ISNDPQSVAA RLRRERISEK IRILQRLVPG GTKMDTASML  180
DEAIRYVKFL KRQIRQLQSA NHHLPPPQVP VPPCPSNENW ENNNIVTPAK ALVLGSSSTM  240
VTPNASDPMY EVIGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019263736.11e-112PREDICTED: transcription factor IND-like
TrEMBLA0A314L5V81e-111A0A314L5V8_NICAT; Transcription factor hec3
STRINGXP_009783821.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-46bHLH family protein