PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00013g00133.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

WRKY

Protein Properties

Length: 570aa MW: 62125.4 Da PI: 7.7447

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00013g00133.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	212	271	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Peaxi162Scf00013g00133.1 212 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHT 271 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-31	197	273	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-27	205	273	IPR003657	WRKY domain
PROSITE profile	PS50811	28.001	207	273	IPR003657	WRKY domain
SMART	SM00774	7.3E-36	212	272	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	213	270	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MIQQGAGMVK RERSPPENSM ASSSTHKEQD DQLASAKGEM RDVMEENHRL RTHLDRLMKD 60 YRNLQNQLHD VVQKEQTEIS SSTVNTTHHE SEEEADQLVS LSLGRTSSDM KKEELSKFFS 120 KNKAEEENKG GLTLGLDCKF GKNTTPTESS PINLSPENSL EEAAKEENGD TWPPNKVLKT 180 MRNNGENDDV SLQNPTKRAR VSVRVRCDAP TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV 240 APSCPVRKQV QRCAEDMSIL ITTYEGTHNH TLPLAATAMA STTSAAACML LSGSSSSSDH 300 QNPQLSTTNT ATTSANINGL NFYLSDNSKP KPFYFPNSSI SSAPNALPTI TLDLTSSSSS 360 TSLSHLNKMS SYNFPPRYNN SSTNLNFSSL ESNPLPISWS NGVLNYANQA YNKNQNIGSL 420 NFSSRPSTPT QESNIFQSYL QKSIMNNNPT STQTSLVQQD TIAAATKAIT SDPNFQSALA 480 AALTSIMGNN PTANKSEPFP ILSSLPSSSN NPNNCSSSFL NKPTTTNSSS ANTQPGNNNL 540 VFFTQPNSSS LPFSASTKGK STSSSENKFD

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MIQQGAGMVK RERSPPENSM ASSSTHKEQD DQLASAKGEM RDVMEENHRL RTHLDRLMKD  60
YRNLQNQLHD VVQKEQTEIS SSTVNTTHHE SEEEADQLVS LSLGRTSSDM KKEELSKFFS  120
KNKAEEENKG GLTLGLDCKF GKNTTPTESS PINLSPENSL EEAAKEENGD TWPPNKVLKT  180
MRNNGENDDV SLQNPTKRAR VSVRVRCDAP TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV  240
APSCPVRKQV QRCAEDMSIL ITTYEGTHNH TLPLAATAMA STTSAAACML LSGSSSSSDH  300
QNPQLSTTNT ATTSANINGL NFYLSDNSKP KPFYFPNSSI SSAPNALPTI TLDLTSSSSS  360
TSLSHLNKMS SYNFPPRYNN SSTNLNFSSL ESNPLPISWS NGVLNYANQA YNKNQNIGSL  420
NFSSRPSTPT QESNIFQSYL QKSIMNNNPT STQTSLVQQD TIAAATKAIT SDPNFQSALA  480
AALTSIMGNN PTANKSEPFP ILSSLPSSSN NPNNCSSSFL NKPTTTNSSS ANTQPGNNNL  540
VFFTQPNSSS LPFSASTKGK STSSSENKFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-21	199	273	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU017422	1e-120	GU017422.1 Solanum lycopersicum WRKY72-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498008.1	0.0	PREDICTED: probable WRKY transcription factor 61
Swissprot	D8VNC6	1e-178	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A1S4CA48	0.0	A0A1S4CA48_TOBAC; probable WRKY transcription factor 61
STRING	XP_009601191.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	6e-66	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]