PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00014g01719.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 540aa    MW: 60646.9 Da    PI: 7.7734
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00014g01719.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-093453772254
                               SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               ++yp+ +++  LAk++gL+ +qV++WF N R +
  Peaxi162Scf00014g01719.1 345 HPYPTDSDKVMLAKQTGLSRNQVSNWFINARVR 377
                               89*****************************88 PP
2BELL101.37.3e-33207276372
                      BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                               +e+++kk+kL+s+l+eV+krYk y++qlq+v++sFe v glg+a+p+++l lka+S+hFrcLk+ai++q+
  Peaxi162Scf00014g01719.1 207 NEHRRKKSKLISMLDEVYKRYKLYYQQLQAVVASFESVPGLGNAAPFANLSLKALSKHFRCLKNAITDQL 276
                               799****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.1E-48144274IPR006563POX domain
PfamPF075262.5E-36149273IPR006563POX domain
PROSITE profilePS5007112.034318381IPR001356Homeobox domain
SMARTSM003892.7E-10321385IPR001356Homeobox domain
CDDcd000868.66E-12321382No hitNo description
SuperFamilySSF466894.71E-17323388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27324385IPR009057Homeodomain-like
PfamPF059201.3E-18338377IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAEGYEPYHV PQQSRRDKLR VFAQNHHSTD IENLQLQGCS TTTLLPFYDP SLIPSDFLTS  60
NAKEKGLNFM DPQSSLVSFQ EINSNPFLYS HQNLRFLDHQ PQPLSIVATQ LNLQRYDSSM  120
FTTDNVATCN DLSKRSTVPL GPFTGYASIL KGSRFLKPAQ MLLEEICDVG NKGIYAEKFE  180
GDDLVVMDPL QEAHISDDPQ YSCSDGNEHR RKKSKLISML DEVYKRYKLY YQQLQAVVAS  240
FESVPGLGNA APFANLSLKA LSKHFRCLKN AITDQLKYTD KSQHCESDSI AKVGNPGKGL  300
YSQRPAAIHN AGFVDHHQPV WRPQRGLPER AVTVLRAWLF DHFLHPYPTD SDKVMLAKQT  360
GLSRNQVSNW FINARVRLWK PMVEEIHMLE TRQAHKAASQ REGQHNNHPT SNSLASENPS  420
TSAQQFQDVS LKRTRNHDPS ETHLGRNSET MNLSFSSHSR VGVDQMSASA GNASGVSLTL  480
GLHQNNNNVI GLSESFPRNA ARRFGIDANN EGFMFSSFEA QNRQLGRDII GGQLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15327385563Homeobox protein Meis2
3k2a_B2e-15327385563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610004.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_018628807.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-124BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1S4ANF40.0A0A1S4ANF4_TOBAC; BEL1-like homeodomain protein 9
STRINGXP_009610001.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-116TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]