PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00016g00238.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

DBB

Protein Properties

Length: 208aa MW: 23347.2 Da PI: 6.33

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00016g00238.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.2e-07	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ +C ++ lC++C + H+ Peaxi162Scf00016g00238.1 4 QCDVCDKEEASVYCSADEATLCKSCDYQVHHA 35 7***************************9743 PP
2	zf-B_box	30.2	9e-10	55	92	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++e ++ lfC++++ lC++C l++H+ Ht Peaxi162Scf00016g00238.1 55 SPRCDICQERRALLFCKEDRAILCKECDLQIHQAneHT 92 689*****************************767765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.978	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.61E-4	3	33	No hit	No description
Pfam	PF00643	6.7E-6	4	34	IPR000315	B-box-type zinc finger
SMART	SM00336	7.0E-6	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.466	53	100	IPR000315	B-box-type zinc finger
SMART	SM00336	1.8E-15	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.4E-8	55	92	IPR000315	B-box-type zinc finger
CDD	cd00021	3.45E-9	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0080167	Biological Process	response to karrikin
GO:1900458	Biological Process	negative regulation of brassinosteroid mediated signaling pathway
GO:2000306	Biological Process	positive regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MKIQCDVCDK EEASVYCSAD EATLCKSCDY QVHHANKLAS KHLRFSLIHP SFKDSPRCDI 60 CQERRALLFC KEDRAILCKE CDLQIHQANE HTQKHNRFLL TGVQLSSAVT SNHNQTSSSI 120 STTGSHKLAR SSGSTSGIKS CSTIESTPNF QVDYVQEGSV STSSISEYLI ETLPGWQVED 180 FLEYPCSSPY GKVFVDYTLL LYDLTYIH

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	4e-66	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015072091.1	1e-107	B-box zinc finger protein 20 isoform X1
Swissprot	Q0IGM7	5e-65	BBX20_ARATH; B-box zinc finger protein 20
Swissprot	Q9LQZ7	6e-65	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A2G3BW13	1e-104	A0A2G3BW13_CAPCH; B-box zinc finger protein 20
STRING	Solyc01g110180.2.1	1e-101	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1463	23	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	8e-66	salt tolerance homolog2

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]