PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g01342.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 112aa    MW: 13066.1 Da    PI: 8.4781
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g01342.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.95.1e-20291071599
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                l +p +f++++ ++  + kt  l+ + g+ W++kl   k +++ + ++GWk+F k+++Lk+gDf++F++dg+++f  +v++f+k
  Peaxi162Scf00016g01342.1  29 KLQVPPEFVKHITEE--TAKTALLKGPCGKYWNMKL--HKEGNKLFYQGGWKKFIKEQHLKDGDFLLFHYDGEMTF--HVRIFDK 107
                               4669*****777644..6679***************..**********************************9999..****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2513107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-2413107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.32515108IPR003340B3 DNA binding domain
CDDcd100179.96E-1916106No hitNo description
SMARTSM010194.8E-1618108IPR003340B3 DNA binding domain
PfamPF023626.1E-1827107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MVGQSSSSSI PRDDSPCFYK IILNPQDEKL QVPPEFVKHI TEETAKTALL KGPCGKYWNM  60
KLHKEGNKLF YQGGWKKFIK EQHLKDGDFL LFHYDGEMTF HVRIFDKCGL ER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613235.19e-53PREDICTED: B3 domain-containing protein Os01g0723500-like
RefseqXP_016501188.19e-53PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1S4CJ432e-51A0A1S4CJ43_TOBAC; B3 domain-containing protein Os01g0723500-like
STRINGXP_009613235.14e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.16e-18B3 family protein