PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g01953.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 257aa    MW: 29240.3 Da    PI: 7.7353
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g01953.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1635124198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f+k +++s+v+   +l+lp+ f++ h   ++ ++t+tl des ++++ k+  ++++    l++GW++F  a++L egD++vF++ 
  Peaxi162Scf00016g01953.1  35 FVKPMIRSNVSGGFWLSLPRLFCQLHL--PRHDITVTLVDESQEEFRTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQMF 113
                               89*********************8884..45789****************555555....9**********************64 PP

                               SSSEE..EEEEE- CS
                        B3  86 grsefelvvkvfr 98 
                               +  +  l+v ++r
  Peaxi162Scf00016g01953.1 114 RFCK--LKVYIVR 124
                               4233..4777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1828126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-2231126IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-2533124No hitNo description
SMARTSM010196.9E-1635126IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43435126IPR003340B3 DNA binding domain
PfamPF023621.9E-1435125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAMMHNVYGQ IDLASSAQYR AEEVQSRLNA KYPSFVKPMI RSNVSGGFWL SLPRLFCQLH  60
LPRHDITVTL VDESQEEFRT KYLAERNGLS GGWRGFSLAH NLVEGDVLVF QMFRFCKLKV  120
YIVRANYLAE VDAALVLLHL DAHQKHIDPV HQRQDIRNIK MAGFKRQRLS TQEGDSYSAE  180
NMLQQLHKHS HPRNTCEDLD IPSKGLAYED LSINMDAVKA GKFNDLPNGF SSWNTRPTGL  240
EKIEIISFSG GYSVEPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755137e-53HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230781.11e-150B3 domain-containing protein At5g42700
RefseqXP_010315232.11e-150B3 domain-containing protein At5g42700
RefseqXP_015163759.11e-150PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
RefseqXP_019258000.11e-150PREDICTED: B3 domain-containing protein At3g19184-like isoform X2
TrEMBLA0A3Q7ESM61e-148A0A3Q7ESM6_SOLLC; Uncharacterized protein
STRINGSolyc01g108120.2.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-45B3 family protein