PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00016g02736.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

LBD

Protein Properties

Length: 211aa MW: 23237.4 Da PI: 7.76

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00016g02736.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.4	3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ e++r+++++sl++eA+ r+ +Pv+Gavg++ Peaxi162Scf00016g02736.1 2 SCNGCRILRKGCNENCILRQSLqgidsPHAQANATVFVAKFFGRAGLMSFLSSVTESQRPALFQSLLFEACGRTVNPVHGAVGLL 86 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelall 97 ++++++++q+++e++l Peaxi162Scf00016g02736.1 87 WTGNWHVCQSSVETVLK 103 ********9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.607	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIDSPH AQANATVFVA KFFGRAGLMS FLSSVTESQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHVCQSSVET VLKGGVLRPL PEFSGTLPEN 120 DSGSSEANDV DLFKSQSLNF RSKRKIIDEV AEDLDLGLTP GFPVKMNRRT EKRRAATPNS 180 DESDTTTLES SFVCQQNMQQ GHETKLLRLF I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	4e-57	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625187.1	1e-130	PREDICTED: LOB domain-containing protein 37-like
Refseq	XP_016477118.1	1e-130	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1S4AL07	1e-129	A0A1S4AL07_TOBAC; LOB domain-containing protein 37-like
STRING	XP_009625187.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-67	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]