PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g02929.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 188aa    MW: 20756 Da    PI: 10.6715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g02929.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.5e-12556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w+++
  Peaxi162Scf00016g02929.1  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPEfigvlYMRSNVDLKDKWRNL 56
                              79****************************99999**99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.506161IPR017930Myb domain
SuperFamilySSF466895.46E-16270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-14456IPR009057Homeodomain-like
SMARTSM007179.1E-6459IPR001005SANT/Myb domain
PfamPF002494.3E-9556IPR001005SANT/Myb domain
CDDcd116604.03E-19656No hitNo description
SuperFamilySSF467855.33E-15117179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.6E-13117182IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.6E-14118179IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.619119188IPR005818Linker histone H1/H5, domain H15
PfamPF005388.7E-9124179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPEFIGV LYMRSNVDLK DKWRNLSVMA  60
SGWGSREKAR LALKRMNQAR KQDESSLAVS VAQSDGEVAE ARLATTSSGS PQIGGSKRSI  120
IRLDNLIMEA ISNLKEPGGS NKTTIASYIE DQYWAPPNFK RLLSAKLKYL AASGRLIKVI  180
SVLQFTLQ
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331352e-55AC233135.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-92h13 map 1, complete sequence.
GenBankHG9754402e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755132e-55HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501292.11e-115PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016501293.11e-115PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK46e-83TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1S4CJC81e-113A0A1S4CJC8_TOBAC; telomere repeat-binding factor 1-like
STRINGXP_009758805.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-77telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]