PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g03250.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 118aa    MW: 13378.8 Da    PI: 10.8076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g03250.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF473.4e-151544231
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC 31
                              +ien+ n qvtfskRrng++KKA+EL v++
  Peaxi162Scf00016g03250.1 15 KIENSNNLQVTFSKRRNGLFKKANELAVMT 44
                              7***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.619644IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-12660IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-14744IPR002100Transcription factor, MADS-box
CDDcd001201.10E-17744No hitNo description
PRINTSPR004045.3E-13828IPR002100Transcription factor, MADS-box
PfamPF003192.5E-141544IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-132843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MARLGKGRKK VPMSKIENSN NLQVTFSKRR NGLFKKANEL AVMTVLNTQL NFLEDQLASA  60
LELKRKLDDE TKILEKQLGI IPMKEMNKTQ ATMMLQALQE LSLKVKNYGT ANMPPKSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009600724.11e-21(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1925233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-13M-type_MADS family protein