PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00016g03256.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20073.6 Da    PI: 5.0359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00016g03256.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.71.9e-201962245
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              +i+n  nr+vtfskRr g++KKA+EL++L++ae+a+i+ s +g+
  Peaxi162Scf00016g03256.1 19 PINNLNNRHVTFSKRRLGLFKKASELCILTGAEIAIIVQSLKGH 62
                              799************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-241070IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.0391061IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-221196IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-131232IPR002100Transcription factor, MADS-box
PfamPF003199.6E-192065IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-133247IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-134768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNVNTAKKTQ GRRKIEIQPI NNLNNRHVTF SKRRLGLFKK ASELCILTGA EIAIIVQSLK  60
GHRIFAFGHP SVDVVIDCYV NGKSSSSEAD QLNNMQPPVD DMGIEQLEEF VSALEELKKN  120
VTMRADELSM INGSSMHASS PNSSVNIARF GIEDQYMNEA VDDCASIVPF DFDHQGGDDG  180
QS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402041e-34AC240204.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-33m2 map 1, complete sequence.
GenBankHG9754401e-34HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-34HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231377.13e-77agamous-like MADS-box protein AGL62
TrEMBLM1A2B34e-77M1A2B3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000131056e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-30AGAMOUS-like 62