PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00020g01929.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CO-like
Protein Properties Length: 382aa    MW: 42833.3 Da    PI: 6.0125
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00020g01929.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.4e-071253439
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              r+C+++ +   + +C+ ++ +lC+ C   +H        H++
  Peaxi162Scf00020g01929.1 12 RVCDTCRSAACTVYCRADSAYLCAGCDARIHAAnlvasrHER 53
                              79******99*********************65677777765 PP
2zf-B_box30.11e-095499342
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                               ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp+
  Peaxi162Scf00020g01929.1 54 VWVCEACERAPAAFLCKADAASLCASCDSDIHSAnplarrHHRVPI 99
                              689*****************************66899999877775 PP
3CCT69.96.7e-24313356144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Peaxi162Scf00020g01929.1 313 REARVLRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 356
                               9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.9E-9956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153956IPR000315B-box-type zinc finger
CDDcd000211.17E-71256No hitNo description
PROSITE profilePS5011911.1495299IPR000315B-box-type zinc finger
PfamPF006431.6E-75399IPR000315B-box-type zinc finger
CDDcd000216.07E-95599No hitNo description
SMARTSM003363.2E-95799IPR000315B-box-type zinc finger
PfamPF062038.6E-18313355IPR010402CCT domain
PROSITE profilePS5101716.638313355IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLKKESSNNW ARVCDTCRSA ACTVYCRADS AYLCAGCDAR IHAANLVASR HERVWVCEAC  60
ERAPAAFLCK ADAASLCASC DSDIHSANPL ARRHHRVPIM PIPGTEDDGF LTTPDDEETI  120
DEEDEDEAAS WLLLNPPPVK NNNNNNNKNN INNNQSNNNY GMLFGGEVVD DYLDLGEYSP  180
CQDSQFTDQY SVNQHQQNYS VPQKSYGGDS VVPVQDGHGK YTIHHQQHQQ QQQQQNHHLS  240
FQLGMEYENS NTGYGYPASM SHSVSMSSMD VSVVPESALS ETSNSHPRPP KGTIDLFSGP  300
PVQIPQQLTP MDREARVLRY REKKKNRKFE KTIRYASRKA YAETRPRIKG RFAKRTDVEA  360
EVDQMFSTQL IADSSYGIVP SF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630583.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-139COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLV9LXL20.0V9LXL2_TOBAC; Constans
STRINGXP_009630583.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-106CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]