PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00021g00161.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 169aa    MW: 18441.1 Da    PI: 7.4638
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00021g00161.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.42e-37101111100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                               +C aCk+lrrkC ++C++apyf ++q  + +fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPvyG+vg+i++l
  Peaxi162Scf00021g00161.1  10 PCGACKFLRRKCMRGCIFAPYFDSSQqgMLHFAAVHKVFGASNASKLLLSTPANKRLETVVTLCYEALARVRDPVYGSVGHIFTL 94 
                               7*********************88773459******************************************************* PP

                    DUF260  84 qqqleqlkaelallkee 100
                               qqq+ +l+aela+++++
  Peaxi162Scf00021g00161.1  95 QQQVVTLQAELAYVQAR 111
                               *************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.3199112IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-3610109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSSGYDGGGP CGACKFLRRK CMRGCIFAPY FDSSQQGMLH FAAVHKVFGA SNASKLLLST  60
PANKRLETVV TLCYEALARV RDPVYGSVGH IFTLQQQVVT LQAELAYVQA RLSTLQHVNY  120
MPPASSLTDL QSASSNISSV CLDPLFNIIT GLSDHVLDQP LENYDVHIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3471058104LOB family transfactor Ramosa2.1
5ly0_B5e-3471058104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789949.11e-77PREDICTED: LOB domain-containing protein 19
RefseqXP_016441663.11e-77PREDICTED: LOB domain-containing protein 19-like
SwissprotO813223e-56LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S3XP112e-76A0A1S3XP11_TOBAC; LOB domain-containing protein 19-like
TrEMBLA0A1U7XST22e-76A0A1U7XST2_NICSY; LOB domain-containing protein 19
STRINGXP_009789949.14e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-58LOB domain-containing protein 31