PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00021g00213.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 211aa MW: 22362.1 Da PI: 10.012

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00021g00213.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.5	9.6e-38	16	109	3	91
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ +++ +ss+s Peaxi162Scf00021g00213.1 16 VKKAPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPATFStlSNSLLNSSTS-- 98 699*****************************************************************777432222222222.. PP TCP 86 ssg.....kaa 91 + + k+a Peaxi162Scf00021g00213.1 99 TVSapldhKSA 109 22233543333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-34	21	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	21	75	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSTSVEGNGA AANNGVKKAP AKDRHSKVDG RGRRIRMPIV CAARVFQLTR ELGHKSDGQT 60 IEWLLRQAEP SIIAATGTGT IPATFSTLSN SLLNSSTSTV SAPLDHKSAP FLLGKRLRSE 120 EDGEQNKDVV GPTAGFWAVP ARPDYGQVWS FAAAPPQEMG LLNSANSRFM GEVSSAGRVG 180 NYFPIAQGHL NLLASLSGPV QLGRRDDDGG H

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239435	9e-55	AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBank	GQ496333	9e-55	GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBank	HG975440	9e-55	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	9e-55	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233810.1	4e-99	TCP transcription factor 15
Swissprot	Q9FMX2	4e-76	TCP7_ARATH; Transcription factor TCP7
TrEMBL	G3BGV5	1e-97	G3BGV5_SOLLC; TCP transcription factor 15
STRING	Solyc01g008230.2.1	2e-98	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-59	TCP family protein