PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00021g00218.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

TCP

Protein Properties

Length: 364aa MW: 40382.1 Da PI: 10.4112

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00021g00218.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98	1.7e-30	148	227	15	89
TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg.... 88 v+gR+RR+R++a+caar+F+L++eLG+++d++ti WLlq a+p+i+ +tg+++++a ++ + +++++ Peaxi162Scf00021g00218.1 148 VEGRGRRIRMPATCAARVFQLTRELGHKTDGETIRWLLQHAEPSIISATGSGTTPAIAVsvngtlkI------PTTTENNDerkr 226 89*************************************************9999954432221221......111111111111 PP TCP 89 k 89 k Peaxi162Scf00021g00218.1 227 K 227 1 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	18.399	140	195	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-24	150	240	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDSTNINNIP SFMAVPPSAR RRHMVPPTTT IPIISPKQEP QDLADQKPPF IKVTLPTPTM 60 RHSVSTAQLP MSPPPPVQQH NKVASSKDRH TKHSPGFYKG NEIQFSTINL NFLQENGHIF 120 LKKHFEQTQQ QQHFEQTPFN NIKFYFLVEG RGRRIRMPAT CAARVFQLTR ELGHKTDGET 180 IRWLLQHAEP SIISATGSGT TPAIAVSVNG TLKIPTTTEN NDERKRKRCS NSEFIDVKQS 240 NNHIATTINK EHVGVDVKHS NNVTTSFAPV MSIVPSHYQT IMPVSSMLAR NYSMMAAPST 300 VWIIPQITVS SIPSSRTTAA THHQELIMQP SSCVIVRPAT LLDISSSAVI PLLSATASNI 360 KHDG

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDSTNINNIP SFMAVPPSAR RRHMVPPTTT IPIISPKQEP QDLADQKPPF IKVTLPTPTM  60
RHSVSTAQLP MSPPPPVQQH NKVASSKDRH TKHSPGFYKG NEIQFSTINL NFLQENGHIF  120
LKKHFEQTQQ QQHFEQTPFN NIKFYFLVEG RGRRIRMPAT CAARVFQLTR ELGHKTDGET  180
IRWLLQHAEP SIISATGSGT TPAIAVSVNG TLKIPTTTEN NDERKRKRCS NSEFIDVKQS  240
NNHIATTINK EHVGVDVKHS NNVTTSFAPV MSIVPSHYQT IMPVSSMLAR NYSMMAAPST  300
VWIIPQITVS SIPSSRTTAA THHQELIMQP SSCVIVRPAT LLDISSSAVI PLLSATASNI  360
KHDG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	8e-41	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	8e-41	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601442.1	6e-74	PREDICTED: transcription factor TCP9-like
Refseq	XP_016502708.1	6e-74	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A1S4CN85	1e-72	A0A1S4CN85_TOBAC; transcription factor TCP9-like
STRING	XP_009601442.1	2e-73	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-46	TCP family protein