PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00021g00922.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 803aa    MW: 87845.8 Da    PI: 6.3709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00021g00922.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-2198153156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Peaxi162Scf00021g00922.1  98 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 153
                               678899***********************************************999 PP
2START209.41.3e-653075321206
                               HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                     START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                               ela++a++elvk+a+ +ep+W++s      e++n +e++++f++  +     + +ea+r++g+v+ +++ lve+l+d++ +W e+
  Peaxi162Scf00021g00922.1 307 ELALAAMDELVKLAQTDEPLWFRSMegggkEILNHEEYMRTFTPCIGmrpnsFVSEASRETGMVIINSMALVETLMDSN-KWAEM 390
                               5899***************************************9999****9***************************.***** PP

                               -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                     START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                               ++    + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd+ ++ +  + +  +++lp
  Peaxi162Scf00021g00922.1 391 FPclipRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSVDNIREASGAPTFPNCRRLP 475
                               ************************************************************************99*********** PP

                               EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               Sg+++++++ng+skvtwveh++++++++h l+rsl++ g+ +ga++wvatlqrqce+
  Peaxi162Scf00021g00922.1 476 SGCVVQDMPNGYSKVTWVEHAEYDESVIHHLYRSLISAGMGFGAQRWVATLQRQCEC 532
                               *******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-2284155IPR009057Homeodomain-like
SuperFamilySSF466899.84E-2186155IPR009057Homeodomain-like
PROSITE profilePS5007117.5495155IPR001356Homeobox domain
SMARTSM003893.1E-1796159IPR001356Homeobox domain
CDDcd000861.27E-1897155No hitNo description
PfamPF000462.0E-1898153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
PROSITE profilePS5084844.034298535IPR002913START domain
SuperFamilySSF559612.2E-33300532No hitNo description
CDDcd088751.66E-123302531No hitNo description
SMARTSM002341.9E-50307532IPR002913START domain
PfamPF018522.8E-57307532IPR002913START domain
SuperFamilySSF559615.68E-24551789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MNFGDFLDNN SGGGGGARIV ADIPFNNNNN SNSSNNSINM PTGAISQPRL LSQSLNKSIN  60
GRRSREEEPE SRSGSDNLEE GASGDDQEDA ADKPPRRKKR YHRHTPQQIQ ELEALFKECP  120
HPDEKQRLEL SKRLCLETRQ VKFWFQNRRT QMKTQLERHE NSLLRQENDK LRAENMSIRE  180
AMRNPICTNC GGPAMIGEIS LEEQHLRIEN ARLKDELDRV CGLAGKFLGR PISSLVTSMP  240
PPMPNSSLEL GVGNNGFVVG GLSNVPTTLP LAPSPDFGVG ISNSLPMVTR QTSTGIERSL  300
ERSMYLELAL AAMDELVKLA QTDEPLWFRS MEGGGKEILN HEEYMRTFTP CIGMRPNSFV  360
SEASRETGMV IINSMALVET LMDSNKWAEM FPCLIPRTST TDVISSGMGG TRNGALQLMH  420
AELQVLSPLV PIREVNFLRF CKQHAEGVWA VVDVSVDNIR EASGAPTFPN CRRLPSGCVV  480
QDMPNGYSKV TWVEHAEYDE SVIHHLYRSL ISAGMGFGAQ RWVATLQRQC ECLAILMSST  540
VSSRDHTAIT PSGRRSMLKL AQRMTNNFCA GVCASTVHKW NKLCAGNVDE DVRVMTRKSV  600
DDPGEPPGIV LSAATSVWLP VSPQRLFDFL RDERLRSEWD ILSNGGPMQE MAHIAKGQDH  660
GNCVSLLRAS AMNTNQSSML ILQETCIDAA GALVVYAPVD IPAMHVVMNG GDSAYVALLP  720
SGFSIVPDGP GSRGPNNANC GSNGPSCNGG PGERISGSLL TVAFQILVNS LPTAKLTVES  780
VETVNNLISC TVQKIKAALH CES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2221850.0GQ222185.1 Solanum lycopersicum cultivar M82 cutin deficient 2 (CD2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259406.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J6ISN20.0A0A1J6ISN2_NICAT; Homeobox-leucine zipper protein anthocyaninless 2
STRINGXP_009782443.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]