PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00021g01317.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRF
Protein Properties Length: 425aa    MW: 46833.4 Da    PI: 9.181
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00021g01317.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.54.1e-22127170145
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                               d+epgrCrRtDGKkWRC+r+v++g+k+C +H+hrg  rsrk++e+
  Peaxi162Scf00021g01317.1 127 DPEPGRCRRTDGKKWRCKRDVIPGQKYCGHHMHRG-RRSRKPVEA 170
                               79*********************************.688888875 PP
2WRC57.91.8e-18319353640
                       WRC   6 rCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 
                               rCrR+DGKkWRCs+++++ +k+CE H+hrg +r++
  Peaxi162Scf00021g01317.1 319 RCRRSDGKKWRCSKNAVPHQKYCETHMHRGAKRTK 353
                               9*****************************99986 PP
3QLQ431.4e-153973337
                       QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                              FTaaQ+++L  Q+ ++Ky+++++PvP +L + i++
  Peaxi162Scf00021g01317.1 39 FTAAQFHELQLQAVIFKYIISGLPVPFHLFFTIWN 73
                              *****************************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-53773IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.7063873IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-113972IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.791127171IPR014977WRC domain
PfamPF088791.7E-18128167IPR014977WRC domain
PROSITE profilePS5166720.161314358IPR014977WRC domain
PfamPF088795.9E-16319353IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
KGENVKIEKK EGSPPCIKLS LGYGDSREEE KGENAKCVFT AAQFHELQLQ AVIFKYIISG  60
LPVPFHLFFT IWNSVSSSLG SADDSFTQWR AWLHEYLELL KHCHTDLILF ISVLVSVGRF  120
DYASMMDPEP GRCRRTDGKK WRCKRDVIPG QKYCGHHMHR GRRSRKPVEA TECVMKSDDM  180
SITSKSSKLY ASSDDPGSSC APASTKSASL SSTSRNNQNN SIGVSSAKAR TANFCNSSGK  240
QDNYMACNRK NSTTCQRTTP VITGKDADSK NIDLNCISPS KTNQKQNYGD AGNSGGLAHV  300
FGTSAKRDLQ YTTETGLQRC RRSDGKKWRC SKNAVPHQKY CETHMHRGAK RTKVASDSAV  360
VASSKPSSYR FCQPENDGSG RNLNTGLSIS TLPGPRNITK DDDSDSNSIS DATTITDETP  420
AFMSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800682.10.0PREDICTED: growth-regulating factor 9 isoform X2
RefseqXP_016473165.10.0PREDICTED: growth-regulating factor 9-like isoform X2
TrEMBLA0A1S4A9480.0A0A1S4A948_TOBAC; growth-regulating factor 9-like isoform X2
TrEMBLA0A1U7Y9880.0A0A1U7Y988_NICSY; growth-regulating factor 9 isoform X2
STRINGXP_009800681.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.14e-29growth-regulating factor 9