PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00023g00289.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8552.1 Da    PI: 11.5281
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00023g00289.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.67.8e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              kri+nk  rqvtfskRr+g++KKA+ELS+LCd++vav++fs++g+ly++ss
  Peaxi162Scf00023g00289.1  9 KRIQNKNSRQVTFSKRRKGLIKKAKELSILCDVDVAVVVFSNRGRLYDFSS 59
                              79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.14E-29166IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
CDDcd002655.59E-33260No hitNo description
PRINTSPR004044.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGRKKVEIKR IQNKNSRQVT FSKRRKGLIK KAKELSILCD VDVAVVVFSN RGRLYDFSST  60
NRTEHLFKKP LPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19168168Myocyte-specific enhancer factor 2B
1tqe_Q1e-19168168Myocyte-specific enhancer factor 2B
1tqe_R1e-19168168Myocyte-specific enhancer factor 2B
1tqe_S1e-19168168Myocyte-specific enhancer factor 2B
6c9l_A1e-19168168Myocyte-specific enhancer factor 2B
6c9l_B1e-19168168Myocyte-specific enhancer factor 2B
6c9l_C1e-19168168Myocyte-specific enhancer factor 2B
6c9l_D1e-19168168Myocyte-specific enhancer factor 2B
6c9l_E1e-19168168Myocyte-specific enhancer factor 2B
6c9l_F1e-19168168Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3705291e-79AY370529.1 Petunia x hybrida MADS-box protein 15 (PMADS15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795052.13e-33PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
RefseqXP_009795053.13e-33PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_009804704.12e-33PREDICTED: agamous-like MADS-box protein AGL27
RefseqXP_016435771.13e-33PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
RefseqXP_016435773.13e-33PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_019260170.11e-33PREDICTED: agamous-like MADS-box protein AGL27
SwissprotQ392952e-25AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1S3X7B17e-32A0A1S3X7B1_TOBAC; agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1S3X7P86e-32A0A1S3X7P8_TOBAC; agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A1U7XSL97e-32A0A1U7XSL9_NICSY; agamous-like MADS-box protein AGL27 isoform X1
TrEMBLA0A1U7XVV46e-32A0A1U7XVV4_NICSY; agamous-like MADS-box protein AGL27 isoform X2
TrEMBLA0A1U7Z0044e-32A0A1U7Z004_NICSY; agamous-like MADS-box protein AGL27
TrEMBLA0A314LCH59e-33A0A314LCH5_NICAT; Mads-box transcription factor 57
STRINGXP_009795052.11e-32(Nicotiana sylvestris)
STRINGXP_009804704.17e-33(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.19e-28AGAMOUS-like 15