PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00027g00138.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HB-other
Protein Properties Length: 552aa    MW: 60055.1 Da    PI: 4.558
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00027g00138.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.22.1e-061374655
                              S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                              +f++++++e+e+  +   +  p +e    LA+k            ++ +qV +WFqNrR+  
  Peaxi162Scf00027g00138.1 13 RFNPSEVNEMEAILQAhkTAMPAREVLVALAEKFsssaersgkfVVQMKQVWNWFQNRRYAI 74
                              589999999999999544888999999999999999999999999**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.23E-10475IPR009057Homeodomain-like
SMARTSM003890.0022781IPR001356Homeobox domain
PROSITE profilePS500719.0371377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-81380IPR009057Homeodomain-like
CDDcd000864.13E-41375No hitNo description
PfamPF167195.1E-34160269IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MGRPPSHGGP SFRFNPSEVN EMEAILQAHK TAMPAREVLV ALAEKFSSSA ERSGKFVVQM  60
KQVWNWFQNR RYAIRAKTAK SPGKFSSPPV PQREPAAVTP AKLSASPVPQ SDPAAVRIMA  120
QAPQPIPTPQ ATVKTMPQAP QSLPAASVPS VGRTASENSQ LEFEAKSARD GAWYDVASFL  180
SYKSVEAGDP EVQVRFAGFG EEEDEWVNVR KHVRQRSLPC ESSECVAVLP NDLILCFQEG  240
KEQALYFDAH VLDAQRRRHD VRGCRCRFLE IVPLRKVCRR PETDYRLQQL NAEPPLKQQK  300
IGNDPTTGST MKVDPPAETT QKAQTESRIK PEEPTQKQPA PEDTIKPGPN AAPMQLQKSS  360
TESLTGNTLE PTQKQPTAED TIKPGPNVAP MQLYESSTDS LTDNSLETPP SMEEMPKKPV  420
PEMPEKPVAD TAEVPQAEKE ELHAETTDKA PAEVTENPSA ETTVEPPAEL AENPSSEATV  480
EPPAEVAENP TVETTLEPPA EVADNPTAEI TLEALADSTS KPAEAPAEQS KAEEHVDTEA  540
IVVSADNVNA SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-421582821134SHH1 SAWADEE
4iur_B7e-421582821134SHH1 SAWADEE
4iut_A7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-421582821134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-89HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009628382.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-131SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1J6I1U80.0A0A1J6I1U8_NICAT; Protein sawadee homeodomain-like 2
STRINGXP_009628382.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-118sequence-specific DNA binding transcription factors;sequence-specific DNA binding