PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00029g02912.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 351aa    MW: 39818.2 Da    PI: 6.5591
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00029g02912.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05188207120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C k+F+r  n++ H+
  Peaxi162Scf00029g02912.1 188 FSCPLCFKTFNRYNNMQMHM 207
                               89*****************9 PP
2zf-C2H214.50.0001272294123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C +Cgk F  + + ++H +++
  Peaxi162Scf00029g02912.1 272 FMCRKCGKAFAVRGDWRTHEKNC 294
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66188215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.61188210IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-6254292No hitNo description
Gene3DG3DSA:3.30.160.609.4E-6268292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808272292IPR007087Zinc finger, C2H2
SMARTSM0035549272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTDPYTNYFH GWFNNNLNPL FHFSSSSSSS TPPFSSYNNC ILPSTNFQYN EYFQSSSPPT  60
SPPLKEPLPL LSLSPTRQVI QDQDYSSNCT TMEVDNTSKE NKEESFISSS NYVDDQEDDE  120
NVSVALQLGL PSPSPDLISR LSSTNNEEIN KEEDQVTVAS GYSSTSTLHK GQYWIPTPAQ  180
ILIGPTQFSC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCFCCAPG  240
CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC  300
TCGSDFKHKR SLKDHIKAFG NGHAAYGIDC LEEEDEPASE IEQDNDHDPS N
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-177HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226555.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-138ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A314KRZ60.0A0A314KRZ6_NICAT; Zinc finger protein wip2
STRINGXP_009780788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]