PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00030g00410.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ERF
Protein Properties Length: 249aa    MW: 28371.7 Da    PI: 9.6789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00030g00410.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-17121172256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                               +y+GVr+++ +g+++AeIrdp     kr+r +lg++ t e+Aa a+++a+ kl+g+
  Peaxi162Scf00030g00410.1 121 RYRGVRRRP-WGKFAAEIRDP---TrKRARLWLGTYETSEDAALAYDRAAYKLRGA 172
                               69*******.**********8...3346**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.21E-31120181No hitNo description
Gene3DG3DSA:3.30.730.104.6E-31121180IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22121180IPR016177DNA-binding domain
SMARTSM003801.5E-34121185IPR001471AP2/ERF domain
PROSITE profilePS5103224.724121179IPR001471AP2/ERF domain
PfamPF008471.2E-13121171IPR001471AP2/ERF domain
PRINTSPR003678.2E-13122133IPR001471AP2/ERF domain
PRINTSPR003678.2E-13161181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MYSIDTQTRN TQPNKMQLGH ISSEFDLTLI PHSIEHLFED SSFSELSPLF NYNDSIFQTP  60
SSNSSSAESC TNWDQILYDN NIGDTTTTPS PTSFSYQSEN VFAHPTKSEE RGVQTTPNWQ  120
RYRGVRRRPW GKFAAEIRDP TRKRARLWLG TYETSEDAAL AYDRAAYKLR GARASLNFPH  180
LISSNVSEIN RVKPKRRLKS IELSSSQNTA KIDTPSPKKR NVELINSLAK ANLNKHISIM  240
ERIELATLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28120184468ATERF1
3gcc_A1e-28120184468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193199PKRRLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2596050.0HQ259605.1 Petunia x hybrida ethylene-responsive-element-binding factor 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607861.14e-60PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLE3VVS01e-136E3VVS0_PETHY; Ethylene-responsive-element-binding factor 11
STRINGXP_009607861.12e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13