PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00030g02412.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 272aa    MW: 31355.8 Da    PI: 4.5062
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00030g02412.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1956108456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++++  +q+++Le+ Fe +++++ e++ ++A++lgL+ rq+ +WFqNrRa++k
  Peaxi162Scf00030g02412.1  56 KRRLRVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQIAIWFQNRRARWK 108
                               4567889*********************************************9 PP
2HD-ZIP_I/II121.44.7e-3955141288
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               kkrrl  +qv++LE+ Fe ++kL+perKv++a+eLglqprq+a+WFqnrRAR+ktkqlE+dy+ Lk++ydal+ + +++e+e+e 
  Peaxi162Scf00030g02412.1  55 KKRRLRVDQVQALEKIFEVDNKLDPERKVKIAQELGLQPRQIAIWFQNRRARWKTKQLERDYNILKANYDALQLNYTKVEQEKEG 139
                               9*********************************************************************************998 PP

               HD-ZIP_I/II  87 Lr 88 
                               L 
  Peaxi162Scf00030g02412.1 140 LI 141
                               86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.63E-1951112IPR009057Homeodomain-like
SMARTSM003896.0E-1953114IPR001356Homeobox domain
CDDcd000865.53E-1755111No hitNo description
PROSITE profilePS5007116.45555110IPR001356Homeobox domain
PfamPF000461.3E-1656108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1961108IPR009057Homeodomain-like
PRINTSPR000311.9E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.9E-590106IPR000047Helix-turn-helix motif
PfamPF021831.0E-11110143IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMKRFSFSDS SGKLLYPPEE KNMKENLAYN SEFQAMLDGL EDEDGIEESG CITGKKRRLR  60
VDQVQALEKI FEVDNKLDPE RKVKIAQELG LQPRQIAIWF QNRRARWKTK QLERDYNILK  120
ANYDALQLNY TKVEQEKEGL ITEENSSTFQ RPQEILELNT RNYEVNNKMT DFVDSKDGSS  180
DSDSSGVMNE ENYNNSLNYQ PLMPKVPSYS TALDHLSLSS TTYTQLLDPR ASSTSMSANY  240
QQQVIGRMEE QNALTTEDSC NIYSVDQAPN LY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY173061e-137Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016460142.11e-160PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_018631361.11e-160PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S3Z7G31e-158A0A1S3Z7G3_TOBAC; homeobox-leucine zipper protein ATHB-6-like
STRINGPGSC0003DMT4000792301e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-41homeobox protein 6