PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00031g02810.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 191aa    MW: 21286.4 Da    PI: 4.3013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00031g02810.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.5e-1323109196
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               ffkv +++++++++   +p +f+ e+g   + +  + le +sg  W+vkl  +++ g+ +l++GW++F +   +  g f++F+++
  Peaxi162Scf00031g02810.1  23 FFKVVLSPHASTLH---IPDEFTMEYGP--NLGDLVLLEVPSGAIWKVKL--ENSNGTAWLKEGWNQFKEYYSIGCGYFLLFQYN 100
                               78888777777766...*********84..4788999999**********..********************************* PP

                               SSSEE..EEEE CS
                        B3  86 grsefelvvkv 96 
                               g+s f   v +
  Peaxi162Scf00031g02810.1 101 GNSHF--SVFI 109
                               99999..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2216113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.87120113IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-2221120IPR015300DNA-binding pseudobarrel domain
CDDcd100173.46E-1722111No hitNo description
SMARTSM010197.6E-1223113IPR003340B3 DNA binding domain
PfamPF023621.3E-1023109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVKRCWQGEP EPVNSSERVP CHFFKVVLSP HASTLHIPDE FTMEYGPNLG DLVLLEVPSG  60
AIWKVKLENS NGTAWLKEGW NQFKEYYSIG CGYFLLFQYN GNSHFSVFIF DLSASEIEYP  120
SGPNEDMTPE NVVNTVGDAS HRKDVGGPET QDNSCDDTVD DLSRNKSAGD NEVADHSYSR  180
IQESGCSNIL P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016480126.12e-91PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
RefseqXP_016480127.11e-91PREDICTED: B3 domain-containing protein At4g34400-like isoform X2
RefseqXP_019240661.14e-87PREDICTED: uncharacterized protein LOC109220660 isoform X1
RefseqXP_019240662.14e-87PREDICTED: uncharacterized protein LOC109220660 isoform X2
TrEMBLA0A1S4ATQ63e-90A0A1S4ATQ6_TOBAC; B3 domain-containing protein At4g34400-like isoform X2
TrEMBLA0A1S4AU633e-90A0A1S4AU63_TOBAC; B3 domain-containing protein At4g34400-like isoform X1
STRINGXP_009797235.16e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-23B3 family protein