PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00034g00087.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Trihelix

Protein Properties

Length: 365aa MW: 42034.2 Da PI: 5.1865

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00034g00087.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45	2.8e-14	128	212	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+++e+ L++a ++ r +r++l+ W+ev++++ + ++er+ +qC+++++ l+k+ykk+ + ++s+++yf+++ Peaxi162Scf00034g00087.1 128 WSEHETFILLDAWGDRFLRHGRKSLRSEEWQEVAERVsQGSKIERTDTQCRNRLDTLKKKYKKEMMKLAET-GSATSKWVYFRKM 211 ***********************************555678*****************9999985.667779***** PP trihelix 86 e 86 + Peaxi162Scf00034g00087.1 212 D 212 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.284	126	185	IPR017877	Myb-like domain
Pfam	PF13837	5.3E-21	127	214	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-5	128	191	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDDIQDNGRY PPNPYGMNQG YGSSNRLKLP HRNTSYPRHV GHPYVQEADD YEDIDDEEDD 60 NDDENGVQRI GKDVFEDDDD DDYGDSQRHQ KKRKLKSLLS SYEFAPRVPA PSAAPKLSFG 120 GRNPLSDWSE HETFILLDAW GDRFLRHGRK SLRSEEWQEV AERVSQGSKI ERTDTQCRNR 180 LDTLKKKYKK EMMKLAETGS ATSKWVYFRK MDMLLTSTSP QQAGMSCGMD SGEYVFMTPK 240 AYLNRANGLD EARDSPANSE ESADGEEDDS EDLPPKRSRN GQSRRGGASS FKLIADSIHK 300 FSEIYVKIEN SKRQQMLELE KMRMDFHREL ELQKRQIVER ARAEIARIHQ RSDEENDKSA 360 ENVSG

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDDIQDNGRY PPNPYGMNQG YGSSNRLKLP HRNTSYPRHV GHPYVQEADD YEDIDDEEDD  60
NDDENGVQRI GKDVFEDDDD DDYGDSQRHQ KKRKLKSLLS SYEFAPRVPA PSAAPKLSFG  120
GRNPLSDWSE HETFILLDAW GDRFLRHGRK SLRSEEWQEV AERVSQGSKI ERTDTQCRNR  180
LDTLKKKYKK EMMKLAETGS ATSKWVYFRK MDMLLTSTSP QQAGMSCGMD SGEYVFMTPK  240
AYLNRANGLD EARDSPANSE ESADGEEDDS EDLPPKRSRN GQSRRGGASS FKLIADSIHK  300
FSEIYVKIEN SKRQQMLELE KMRMDFHREL ELQKRQIVER ARAEIARIHQ RSDEENDKSA  360
ENVSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975524	0.0	HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609888.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A0V0ISR2	0.0	A0A0V0ISR2_SOLCH; Putative ovule protein
STRING	XP_009609888.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-70	Trihelix family protein