PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00037g00092.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 416aa MW: 46271.9 Da PI: 8.0384

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00037g00092.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.4e-06	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Peaxi162Scf00037g00092.1 77 FVCEVCNKGFQREQNLQLHRRGH 99 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.76E-5	75	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-6	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.5E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	77	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	88	118	148	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MSNLSSGNSC DEGTEELANE TTSNMLSCKT SCNDGSSDIH QEQALPNKKL RKLPGNPDPT 60 AEVIALSPKT LIATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKTS TEIKKRVYIC 120 PEPTCIHHNP ARALGDLTGI KKHYSRKHGE KKWKCDKCSK KRDSFVTHRA FCDALTEENN 180 KVNQGLASNT GPGTGNSTQV PKLMSNILNL PETRNSNMKM PQIPPRPLNM DRSMFGTSSP 240 NMSATALLQQ AAQMGSTVSS SMINSPIIVQ KGYSSLFNGM LVPSQSDHDQ TQTGNPVHGF 300 VGSILHNGTQ ETFSELLNSN RGDNEKNSRM QDEGWCINGL FNEENQRLLN NEGCDNHLTK 360 VNGESANESL TLDFLGIGGM RQRNFHEIQQ QQQEMSFEQQ KAIQQSNQGL SPMWDV

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MSNLSSGNSC DEGTEELANE TTSNMLSCKT SCNDGSSDIH QEQALPNKKL RKLPGNPDPT  60
AEVIALSPKT LIATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKTS TEIKKRVYIC  120
PEPTCIHHNP ARALGDLTGI KKHYSRKHGE KKWKCDKCSK KRDSFVTHRA FCDALTEENN  180
KVNQGLASNT GPGTGNSTQV PKLMSNILNL PETRNSNMKM PQIPPRPLNM DRSMFGTSSP  240
NMSATALLQQ AAQMGSTVSS SMINSPIIVQ KGYSSLFNGM LVPSQSDHDQ TQTGNPVHGF  300
VGSILHNGTQ ETFSELLNSN RGDNEKNSRM QDEGWCINGL FNEENQRLLN NEGCDNHLTK  360
VNGESANESL TLDFLGIGGM RQRNFHEIQQ QQQEMSFEQQ KAIQQSNQGL SPMWDV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628988.1	1e-177	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_016515957.1	1e-177	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q8H1F5	7e-76	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A1S4DRB6	1e-176	A0A1S4DRB6_TOBAC; protein indeterminate-domain 2-like
STRING	XP_009628988.1	1e-176	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	6e-65	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]