PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00038g01110.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 396aa MW: 44259.5 Da PI: 6.3826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00038g01110.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	313	353	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Peaxi162Scf00038g01110.1 313 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 353 69****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.237	304	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-13	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-14	310	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-12	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-5	313	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.24E-4	326	358	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MESLDWDETP VNFGAAFDPI HVISNWNMPQ RQEAAIRLAA DSIAAKSGAD LSRNSTDQMG 60 FYSSPILNMP YINDNNPMTT CGLMSNFSSN GLNNATKPAT TGLLSSGSLE SLDCLLSATT 120 TNNTDTSIED DDDMSMIFDD SKNLWPNFNT GNNNAVSSRE SHDKPINAKE TNKITCPVYE 180 VDEPVSRDHK YNKRSRDEAL LEPSRNSFNL VQSNLSNADC GNFQLISEKQ LPKSNKKPRT 240 ENYKRPSSSN INFQQMSSSA SSIEEPDPEA IAQMKEMIYR AAAFRPVNFG TEVLERPKRK 300 NVKISSDPQT VAARQRRERI SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL 360 EALGQKPDLM PFNYPLIPMQ THFPIQNPNP IHRPKS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MESLDWDETP VNFGAAFDPI HVISNWNMPQ RQEAAIRLAA DSIAAKSGAD LSRNSTDQMG  60
FYSSPILNMP YINDNNPMTT CGLMSNFSSN GLNNATKPAT TGLLSSGSLE SLDCLLSATT  120
TNNTDTSIED DDDMSMIFDD SKNLWPNFNT GNNNAVSSRE SHDKPINAKE TNKITCPVYE  180
VDEPVSRDHK YNKRSRDEAL LEPSRNSFNL VQSNLSNADC GNFQLISEKQ LPKSNKKPRT  240
ENYKRPSSSN INFQQMSSSA SSIEEPDPEA IAQMKEMIYR AAAFRPVNFG TEVLERPKRK  300
NVKISSDPQT VAARQRRERI SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL  360
EALGQKPDLM PFNYPLIPMQ THFPIQNPNP IHRPKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	318	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019244073.1	1e-158	PREDICTED: transcription factor bHLH87-like
Refseq	XP_019244074.1	1e-158	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2	9e-78	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1J6J2T1	1e-157	A0A1J6J2T1_NICAT; Transcription factor bhlh87
STRING	XP_009777337.1	1e-156	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4350	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	4e-60	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]