PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g01819.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YA
Protein Properties Length: 354aa    MW: 39745.1 Da    PI: 9.8512
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g01819.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32205261158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               dep++VNaKQyq+Il+RRq Rakle+++kl +ksrkpylheSRh+hAl+R+Rg+gGrF
  Peaxi162Scf00038g01819.1 205 DEPIFVNAKQYQAILRRRQYRAKLEAQNKL-SKSRKPYLHESRHRHALNRARGPGGRF 261
                               79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-35203264IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.317204264IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-27206261IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22207229IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860209229IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-22238261IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVRRTQDFLR KDSELSSIQT APSVSVSAHL GSPVDLQMQQ FSTSSGPQNS KHLDVHFRDQ  60
DSSSTQSTGQ SCPEVSSEGE RSIHGKSNMP LQAGNFKSSV KPEVSQSVSS QEHDWTSNAS  120
QKNIACVPFP HRDPYYHGLV VAYGKQTMPM IGKVFFFFLH CIGLSRCVLL MLHMRFLPVS  180
FLQVQSQMLG TVSARMPLPL DLQQDEPIFV NAKQYQAILR RRQYRAKLEA QNKLSKSRKP  240
YLHESRHRHA LNRARGPGGR FLNIKKLRES KSPGIIDDQH IPISNELQLN TKMLEPDVYQ  300
STPAISGITS CSNGDAIYHQ QPLKYSAFSL HIRGALEQDK GKNDLNTNPC LPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21205277271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897610.0AM489761.1 Petunia x hybrida partial mRNA for YA6 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342951.11e-123PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBLM0ZR711e-119M0ZR71_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063581e-120(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139661114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.14e-39nuclear factor Y, subunit A5