PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00039g00172.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 369aa    MW: 41509 Da    PI: 4.6892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00039g00172.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-102953351055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Peaxi162Scf00039g00172.1 295 RKRRERINERLKMLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 335
                               9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.888285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-14285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-13289345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-12291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-11294339No hitNo description
PfamPF000101.0E-7295335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEAVGSFFDE EWESLNRMFS TESADFMLQL HGDDPGLFST NDDGSDLISS AFWQADNKNV  60
TISGIDESIF SPPFRTLNTN LQYLSQECSI NSTSGSDLDI FFPNNGGLQP NNEYVNNLLQ  120
VANNNAYESI DIYVTGHENS KNNVMEDMPC SKEEMRNQPT RDPDVSGKEM QLKRKIDKLE  180
NQQGAEKQKS KDSTENPKKR SRVSRNGPQN KKKAQPKAKK NQKSIIPVEN EGEGEGVEEM  240
INPAGQNIQS SSCSASSEND SNASQELNGD SKESVKEKTR AGREAATDPQ SLYARKRRER  300
INERLKMLQN LVPNGTKVDI STMLEEAVHY VKFLQLQIKL LSSDELWMYA PIAYNGMDIG  360
FYQKILPNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617136.11e-108PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1S3Y8131e-105A0A1S3Y813_TOBAC; transcription factor bHLH84-like
STRINGXP_009617136.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-51root hair defective 6-like 4