PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00044g00198.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ZF-HD

Protein Properties

Length: 187aa MW: 21568.5 Da PI: 8.6716

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00044g00198.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.1	2.4e-29	19	70	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhA+ +GghavDGCgEfmp+ ge +alkC AC+CHRnFHR+e++++ Peaxi162Scf00044g00198.1 19 YKYKECLKNHAVGIGGHAVDGCGEFMPA-GE----DALKCVACNCHRNFHRKETQTH 70 68***********************9.44....6***************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.4E-26	20	67	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-19	20	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.6E-27	20	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.925	21	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.9E-29	111	185	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-17	115	184	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.2E-25	124	181	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEFGNQEMHD DQKELEMPYK YKECLKNHAV GIGGHAVDGC GEFMPAGEDA LKCVACNCHR 60 NFHRKETQTH HPPCYRNPPF GTYFHHVMPE QRPLALPSTS GGGGGGYIED QEDMQRNPNN 120 SGTKKRFRTK FSQKQKEKML ELAEKLGWRI QRQDEGIVQQ LCNEIGVKRH VFKVWMHNNK 180 YILGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-22	123	180	16	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802158.1	2e-99	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Refseq	XP_016462880.1	2e-99	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Swissprot	A2Z259	1e-58	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-58	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S3ZEH4	4e-98	A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2
TrEMBL	A0A1U7YG84	4e-98	A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRING	XP_009802157.1	5e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	9e-61	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]