PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00045g00138.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 428aa    MW: 48817.6 Da    PI: 9.703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00045g00138.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l ++vk +G   W+   ++ g++R++k+c++rw +yl
  Peaxi162Scf00045g00138.1 14 KGAWTKEEDEILGNYVKIHGAAKWNILCKKAGLNRCGKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding55.41.4e-1767110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++++eEd l+++++  lG++ W++Ia+ ++ gRt++++k++w++
  Peaxi162Scf00045g00138.1  67 RGNFSEEEDSLIINLHSSLGNK-WSKIASQLP-GRTDNEIKNHWNT 110
                               89********************.*********.***********97 PP
3Myb_DNA-binding62.86.9e-20211258148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g+WT++Ede+l+d++kq G  +W + ar+ g++R++k+c++rw++yl
  Peaxi162Scf00045g00138.1 211 KGPWTEDEDEKLIDYIKQNGHTNWQSLARKAGLNRCGKSCRLRWNNYL 258
                               79*********************************************7 PP
4Myb_DNA-binding57.53.1e-18264309148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rgr+++eE+e++++++  lG++ W++Ia++++ gRt++++k++++++l
  Peaxi162Scf00045g00138.1 264 RGRFSPEEEEIIINLHSDLGNK-WSKIAAHLP-GRTDNEIKNFYNTHL 309
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.777961IPR017930Myb domain
SuperFamilySSF466892.01E-2911108IPR009057Homeodomain-like
SMARTSM007173.3E-121363IPR001005SANT/Myb domain
PfamPF002492.3E-131461IPR001005SANT/Myb domain
CDDcd001675.02E-91661No hitNo description
PROSITE profilePS5129428.05862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665117IPR009057Homeodomain-like
SMARTSM007179.4E-1766114IPR001005SANT/Myb domain
PfamPF002497.3E-1667110IPR001005SANT/Myb domain
CDDcd001671.27E-1169112No hitNo description
PROSITE profilePS5129426.746206262IPR017930Myb domain
SuperFamilySSF466894.97E-30208305IPR009057Homeodomain-like
SMARTSM007179.3E-17210260IPR001005SANT/Myb domain
PfamPF002491.8E-17211258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-24212265IPR009057Homeodomain-like
CDDcd001671.83E-12213258No hitNo description
PROSITE profilePS5129421.825263313IPR017930Myb domain
SMARTSM007171.5E-17263311IPR001005SANT/Myb domain
PfamPF002493.6E-16264309IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-27266313IPR009057Homeodomain-like
CDDcd001672.93E-12266309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGRSPCCTNN NLNKGAWTKE EDEILGNYVK IHGAAKWNIL CKKAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SEEEDSLIIN LHSSLGNKWS KIASQLPGRT DNEIKNHWNT KLRKKLNKLG  120
IEPQTHKQIP NFNLFNSLQM PPLFSQQDVT QLAKLQLLHF QTLLQTINAI TTTFPSNPLM  180
PNINYPMQDD VNGILNFSMP NFEEDDDNLK KGPWTEDEDE KLIDYIKQNG HTNWQSLARK  240
AGLNRCGKSC RLRWNNYLRP DIKRGRFSPE EEEIIINLHS DLGNKWSKIA AHLPGRTDNE  300
IKNFYNTHLR KKLLRLGIDP KTHKPISKLN SLVNLSHHLT SNSNYFLSLA SVLSLQAQFS  360
LLAKIQQVIQ SPLPTINTIN LLSSIQGNIL SNSSPQLESL RNETEMSKFL DSSLANTTTT  420
PCLDNTNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-30931322128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240410.11e-106PREDICTED: transcription factor MYB34-like
SwissprotQ9SBF37e-65MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1J6JR861e-105A0A1J6JR86_NICAT; Transcription factor myb39
STRINGXP_009622645.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.13e-65myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]