PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00045g01332.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Trihelix

Protein Properties

Length: 319aa MW: 37831.2 Da PI: 7.6713

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00045g01332.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.6	2.6e-21	48	131	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk..lkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 W++qe+++ i++r e+e++++++k k+lWe v+ km +++g++rs++qCk kw+nl +ryk ++++ ++ ++p+fd Peaxi162Scf00045g01332.1 48 WSNQETRDFIAIRGELEREFSSAKrgDLKNLWEMVAVKMkERGGYRRSAEQCKTKWNNLVNRYKGKETSDPDN----GGQFPFFD 128 *******************87633569******667889*****************9999984....4469** PP trihelix 84 qle 86 +l+ Peaxi162Scf00045g01332.1 129 ELH 131 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.724	40	107	IPR017877	Myb-like domain
SMART	SM00717	0.0019	44	109	IPR001005	SANT/Myb domain
Pfam	PF13837	4.3E-21	47	133	No hit	No description
CDD	cd12203	3.60E-20	48	114	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MFGGGEDNEQ NNLGQQFPQR LMLPHQQQQL PFHLLDDFPK RDERVPPWSN QETRDFIAIR 60 GELEREFSSA KRGDLKNLWE MVAVKMKERG GYRRSAEQCK TKWNNLVNRY KGKETSDPDN 120 GGQFPFFDEL HALFTASTNN VHRLQLESEP SSQQARKRPQ RTSRDQSSEE VSEDEEGYAY 180 ESEEVKLGKR SVAPKKKIEK EKRPRTSNAE KPSRQPSLGS TNNTGRTVDN IQEMLKEFFQ 240 QQLRIEVEWR EAMEKRARER ELFEQEWRSS MEKLERDRMM IEQAWREREE QRRIREESRA 300 EKRDALLTTL LNKLIGENP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258089.1	1e-173	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A314LGE6	1e-172	A0A314LGE6_NICAT; Trihelix transcription factor gt-3b
STRING	XP_009614205.1	1e-170	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	6e-32	Trihelix family protein