PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00045g01527.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 258aa    MW: 30010.6 Da    PI: 4.9442
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00045g01527.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-142711898
                              --HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                              +pk f+ ++  g+++    +  +  + g++W+vk+  +++    +l++GW +F+++++L++ D +vF+++g++ef   v++f+
  Peaxi162Scf00045g01527.1  2 IPKAFF-KYldGHIQ----EHAILRSAGKEWRVKV--NGQ----LLEDGWGKFAEEHDLQVEDCLVFRHEGNMEF--EVTIFN 71
                              899999.56544332....3455567*********..444....7*************************99999..888886 PP
2B350.14.8e-161322101099
                               HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                        B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                +k+g + +p  f+ ++ +g+++   +  +  ++g++W+vkl  ++++    +++GW eF+++++L++g ++vF+++g++ef   
  Peaxi162Scf00045g01527.1 132 GFKNG-IKIPIGFL-KYlEGQEKH--EHAILRRNGKEWQVKL--NGHR----FEEGWAEFAEEHDLQVGHMLVFRHEGDMEF--E 204
                               45555.99******.555766433..5777789*********..7777....9***********************999999..9 PP

                               EEEE-S CS
                        B3  94 vkvfrk 99 
                               v++f++
  Peaxi162Scf00045g01527.1 205 VSIFDS 210
                               999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.169173IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-15273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17273IPR015300DNA-binding pseudobarrel domain
CDDcd100175.97E-13271No hitNo description
PfamPF023626.4E-11272IPR003340B3 DNA binding domain
SMARTSM010193.1E-4273IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-23118213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21119213IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.52122211IPR003340B3 DNA binding domain
CDDcd100178.21E-17123209No hitNo description
SMARTSM010196.5E-16125211IPR003340B3 DNA binding domain
PfamPF023623.2E-13134210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
KIPKAFFKYL DGHIQEHAIL RSAGKEWRVK VNGQLLEDGW GKFAEEHDLQ VEDCLVFRHE  60
GNMEFEVTIF NSNHLEREYV KPLEGVNEEN EESDHAGKNF TSQGLNSNMS SSLVTMKVPP  120
KNPHFFKPIV PGFKNGIKIP IGFLKYLEGQ EKHEHAILRR NGKEWQVKLN GHRFEEGWAE  180
FAEEHDLQVG HMLVFRHEGD MEFEVSIFDS SQCNTEYVQH QQEEEEETAK ISDMEGESSY  240
GPFDIKFLIF NFLIYGYV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168739.11e-66PREDICTED: B3 domain-containing protein REM14-like
TrEMBLA0A1S3ZJZ82e-51A0A1S3ZJZ8_TOBAC; B3 domain-containing protein REM14-like
TrEMBLA0A1U7YRV22e-51A0A1U7YRV2_NICSY; B3 domain-containing protein REM14-like
TrEMBLA0A2G2VC799e-52A0A2G2VC79_CAPBA; Uncharacterized protein
STRINGXP_009801949.14e-52(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-29B3 family protein