PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g00221.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 194aa    MW: 21230.2 Da    PI: 6.4758
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g00221.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601361.4e-42361351100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdP+yG++g i +lq+
  Peaxi162Scf00047g00221.1  36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPIYGCAGSICQLQK 120
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               q++ l+a+la++++e
  Peaxi162Scf00047g00221.1 121 QVNDLQAQLAKAQAE 135
                               ***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18135136IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-4236133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MESSTITSSS SRSVSPSSIS SSSPPLSPPA MVVLSPCAAC KILRRRCAEK CVLAPYFPPN  60
DPIKFTTAHR VFGASNIIKF LQELPESQRA DAVSSMVYEA NARLRDPIYG CAGSICQLQK  120
QVNDLQAQLA KAQAEIVNMQ CQQANLMALI CMEIDQSPKS SPPQQSLDNF TNNIPHFIDD  180
NNNYFGSVLE TLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-433514310118LOB family transfactor Ramosa2.1
5ly0_B5e-433514310118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016548470.11e-101PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR07e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1U8EYI91e-99A0A1U8EYI9_CAPAN; LOB domain-containing protein 1-like
TrEMBLA0A2G2VP721e-99A0A2G2VP72_CAPBA; LOB domain-containing protein 1
TrEMBLA0A2G3BA611e-99A0A2G3BA61_CAPCH; LOB domain-containing protein 1
STRINGXP_009593636.14e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-68LOB domain-containing protein 1