PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g00228.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 87aa    MW: 9498.05 Da    PI: 10.6092
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g00228.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260461.5e-143671136
                    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhkl 36
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h+ 
  Peaxi162Scf00047g00228.1 36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRT 71
                              7*********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.7533587IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-123671IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MESSTITSSS SRSVSPSSIS SSSPPLSPPA MVVVSPCAAC KILRRRCAEK CVLAPYFPPN  60
DPIKFTTAHR TRNEMVVRIV RNMHLSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658441.16e-24PREDICTED: LOB domain-containing protein 1
TrEMBLA5AMQ39e-23A5AMQ3_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03700.t012e-23(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-18LOB domain-containing protein 11