PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00047g00229.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 71aa    MW: 7505.66 Da    PI: 9.0549
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00047g00229.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26042.61.7e-133670135
                    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhk 35
                              +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h+
  Peaxi162Scf00047g00229.1 36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHH 70
                              7******************************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.643571IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-123670IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MESSTITSSS SRSVSPSSIS SSSPPLSPPA MVVVSPCAAC KILRRRCAEK CVLAPYFPPN  60
DPIKFTTAHH T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658441.18e-23PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR06e-19LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK089e-19LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA5AMQ31e-21A5AMQ3_VITVI; Uncharacterized protein
STRINGVIT_13s0019g03700.t013e-22(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-18LOB domain-containing protein 11