PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00050g02112.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NF-YC

Protein Properties

Length: 258aa MW: 28600 Da PI: 5.4232

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00050g02112.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	52.2	1.4e-16	1	75	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l ++ + + +t++ +++++++ ++fdfl d+v r Peaxi162Scf00050g02112.1 1 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCGHTYDITLKRGAKTMNSFHLKQCIQSCNVFDFLKDVVSR 75 7***********************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-22	1	74	IPR009072	Histone-fold
Pfam	PF00808	3.0E-15	1	60	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.47E-18	7	76	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCGHTY DITLKRGAKT MNSFHLKQCI 60 QSCNVFDFLK DVVSRVPDLG GAASTAKRRM VTKEDDTDDD VKRSNMHEAA QTNGSGRGRG 120 RGRGRGHGRC GQAVEGESNG QCEKLENPAD VSHQKDEKQN VERLHSIAEQ AVTENVPAAK 180 KPRFPLRNFD LSVDLNVSTN PTAILPEASL SSTNIPETKH EEYLGWSLPE IEKMAIDHMQ 240 LANLNRSLDE EDYDEEDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-18	1	61	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	125	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009797323.1	9e-94	PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBL	A0A1U7Y2F6	2e-92	A0A1U7Y2F6_NICSY; dr1-associated corepressor-like isoform X1
STRING	XP_009797323.1	4e-93	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	2e-48	NF-YC family protein