PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00052g00147.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 720aa    MW: 81039 Da    PI: 5.5602
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00052g00147.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.9e-21582678295
                               EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                               +kvl++sdv+++gr+vlpkk ae+h  +++++ ++ + +ed  ++r+W++k+++  ++ks++y+l+ ++ +Fv+angL+egDf+v
  Peaxi162Scf00052g00147.1 582 QKVLKQSDVGNLGRIVLPKKEAESHlpELESRDGISIAMEDiGTSRVWNMKYRFwpNNKSRMYLLE-NTGDFVRANGLQEGDFIV 665
                               79*************************999999********7778*******99777777777777.****************** PP

                               EEE-SSSEE..EEE CS
                        B3  82 Fkldgrsefelvvk 95 
                               ++ d  ++++++++
  Peaxi162Scf00052g00147.1 666 IYADT-KCGKYLIR 678
                               **543.88887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-28575685IPR015300DNA-binding pseudobarrel domain
CDDcd100153.00E-34579680No hitNo description
SuperFamilySSF1019368.24E-23580675IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.87581683IPR003340B3 DNA binding domain
SMARTSM010196.4E-21581683IPR003340B3 DNA binding domain
PfamPF023623.1E-17582677IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MEFHGNQDGL ENVMVDMDDI HQSQHQHQEQ QPAEFEPMDE EQVNIGAIVG DTEIFLNGDE  60
HEQHHLDVVN DTSIFSTDFP PLPDFPCMSS SSSTSSAPTA LAKPFPSSSS SSSASSAASW  120
AVLKSDAEED NHFNNKMKME QPTPPPPPPP ACLSSSIGDE DCLNVMEDLG YMDLIDANEF  180
WDPCSLFQSD QQNHQDYSNM PESLIQLSQD DSVLHENQER KPHEFDEGGE TDMQSLFTGN  240
SELAFIFFEW LKQNKDYISA EDMRNIKLKR STIESASKRL GSTKEGKKQL LRLILEWVEQ  300
YQLQKKQRMS SDSPLQYQES LHDSNHNPNS SFQYNTVAPD PSACFYPTQW MQPTPSPYIP  360
EPLFATPTPG YVGDPYSCNG AAFTPSLNQT LNGSNGYPAP SAEYQTMESA QSWPPSQFSA  420
NMVAASQYNP FPESDSANAN PQGLFSQYPY QLFDGNGERL MKLGSSATKE ARKKRMARQR  480
RFSSHHYRHH SHQTQHQSQS SDQNLRMVGE NCAMSPVNNP GNWVYWPSAA HSPMMMVPPP  540
DAPQQHPTTE RPVMQQQNHQ KHASADKRQG WKTEKNLKFL LQKVLKQSDV GNLGRIVLPK  600
KEAESHLPEL ESRDGISIAM EDIGTSRVWN MKYRFWPNNK SRMYLLENTG DFVRANGLQE  660
GDFIVIYADT KCGKYLIRGV KVRQNGPKAE GKKPVKKNAR NLSSAAVNSS PVSLMKQLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-375776811105B3 domain-containing transcription factor FUS3
6j9b_D6e-375776811105B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433829.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
TrEMBLA0A1S3X1N10.0A0A1S3X1N1_TOBAC; B3 domain-containing transcription factor ABI3-like
STRINGXP_009628582.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-140B3 family protein