PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00052g01817.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 558aa    MW: 60821.4 Da    PI: 6.302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00052g01817.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.6e-16354400455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Peaxi162Scf00052g01817.1 354 VHNLSERRRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 400
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-21348417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.355350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-17353404No hitNo description
Gene3DG3DSA:4.10.280.106.4E-21354408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-13354400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
VHMMNNHSVP DFEMDDDYAL PTSSGLTRPK KSPMAEDEIM ELLWQNGQVV MQSQNQRSLK  60
KSHLSSGGGG GSGDAVIPSE QAAGREIRPV NETTTTTQQH MFMQEDEMAS WLHYPLDDSS  120
FDYADLLYPP PSAPITTAAP PPREFRTVEI RQPPPLPTQP STASAPISVA QRPPPVPPAR  180
RTGGAAETAP PRFQNFGHFS RLPSRNSTTK IELPPSKSLK ESTVVDSNDT PILESKFSNV  240
ADNIPAISAA TAATSTVPVR EPTETTATTC ELTVTSSPGC SGNSVSASAE PPSQVPSQTT  300
ATVPSGVVAE DRKRKGREND DGECQNEDAE FESADTKKQA RCSTSTKRSR AAEVHNLSER  360
RRRDRINEKM RALQELIPRC NKTDKASMLD EAIEYLKSLQ LQVQMMSMGC GMVPMMYPGM  420
QQYIPTMGMG LGMGMGMEIG MNRPMVPYPP LLPGTAMQNA AAAAQMGPRF PMPPFHLQAV  480
PVPDPSRVQT SNQPDPMLNP LVTHNPNHPR LQNYNDPYQQ FFGLQAQNQA VEQPKNNRTG  540
SSKEVGNPGN HQSGKLII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-127HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591396.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1J6JNV30.0A0A1J6JNV3_NICAT; Transcription factor pif1
TrEMBLA0A1S4DC060.0A0A1S4DC06_TOBAC; transcription factor PIF1-like
TrEMBLA0A1U7XR020.0A0A1U7XR02_NICSY; transcription factor PIF1
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-60phytochrome interacting factor 3-like 5